getEntryStructures

List the experimentally determined PDB structures that contain an entry. Use it to find structural representatives of a domain.

Arguments

Name

Type

Required

Description

accession

string

yes

Entry accession, e.g. IPR000001 or PF00069. The source database is resolved automatically from the accession.

pageSize

integer

no

Structures per page. Default 20, max 100.

Returns

A JSON object with the entry accession, the total structure count, an optional next cursor URL, and a structures array. Each structure has accession (PDB id), name (title), experiment_type, resolution (when available), and the residue ranges where the domain maps in locations (start, end).

{
  "accession": "PF00069",
  "count": 5393,
  "structures": [
    {
      "accession": "1atp",
      "name": "cAMP-dependent protein kinase",
      "experiment_type": "x-ray",
      "resolution": 2.2,
      "locations": [ { "start": 43, "end": 297 } ]
    }
  ]
}

Examples

  • accession="PF00069": PDB structures containing the protein-kinase domain.

  • accession="IPR000001", pageSize=10: ten structures containing the kringle domain.